Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 MEP1AP4-201ENST00000423244 1087 ntBASIC14.48□□□□□ -0.09
HOXD4P09016 DFFBP1-201ENST00000433250 979 ntBASIC14.48□□□□□ -0.09
HOXD4P09016 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.48□□□□□ -0.09
HOXD4P09016 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.48□□□□□ -0.09
HOXD4P09016 AC135586.1-201ENST00000539323 574 ntBASIC14.48□□□□□ -0.09
HOXD4P09016 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.48□□□□□ -0.09
HOXD4P09016 AL033527.5-202ENST00000641632 1098 ntBASIC14.48□□□□□ -0.09
HOXD4P09016 SNX18-202ENST00000343017 3140 ntBASIC14.48□□□□□ -0.09
HOXD4P09016 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.48□□□□□ -0.09
HOXD4P09016 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXD4P09016 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
HOXD4P09016 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXD4P09016 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXD4P09016 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXD4P09016 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.47□□□□□ -0.09
HOXD4P09016 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HOXD4P09016 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HOXD4P09016 FO393414.2-201ENST00000405153 598 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 POU5F1P6-201ENST00000466990 990 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.47□□□□□ -0.09
HOXD4P09016 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.47□□□□□ -0.09
HOXD4P09016 AC008738.7-201ENST00000609744 511 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.47□□□□□ -0.09
HOXD4P09016 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HOXD4P09016 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
HOXD4P09016 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXD4P09016 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HOXD4P09016 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
HOXD4P09016 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.46□□□□□ -0.09
HOXD4P09016 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 AC098614.1-201ENST00000368528 745 ntBASIC14.46□□□□□ -0.09
HOXD4P09016 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms