Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VIMP08670 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VIMP08670 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VIMP08670 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 AC079781.5-202ENST00000641784 3743 ntBASIC16.06■□□□□ 0.16
VIMP08670 AC015656.1-201ENST00000624209 3578 ntBASIC16.06■□□□□ 0.16
VIMP08670 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VIMP08670 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.06■□□□□ 0.16
VIMP08670 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 AC009090.5-201ENST00000624886 2285 ntBASIC16.06■□□□□ 0.16
VIMP08670 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.06■□□□□ 0.16
VIMP08670 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.06■□□□□ 0.16
VIMP08670 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.06■□□□□ 0.16
VIMP08670 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.06■□□□□ 0.16
VIMP08670 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.06■□□□□ 0.16
VIMP08670 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VIMP08670 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.06■□□□□ 0.16
VIMP08670 ABCD1P5-201ENST00000445663 754 ntBASIC16.06■□□□□ 0.16
VIMP08670 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
VIMP08670 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.06■□□□□ 0.16
VIMP08670 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.06■□□□□ 0.16
VIMP08670 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 AL160237.2-201ENST00000556165 472 ntBASIC16.06■□□□□ 0.16
VIMP08670 NTF6B-201ENST00000591913 560 ntBASIC16.06■□□□□ 0.16
VIMP08670 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VIMP08670 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VIMP08670 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 AC233702.3-201ENST00000578656 1387 ntBASIC16.05■□□□□ 0.16
VIMP08670 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.05■□□□□ 0.16
VIMP08670 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.05■□□□□ 0.16
VIMP08670 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.05■□□□□ 0.16
VIMP08670 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.05■□□□□ 0.16
VIMP08670 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.05■□□□□ 0.16
VIMP08670 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VIMP08670 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.04■□□□□ 0.16
VIMP08670 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms