Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF40O75150 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RNF40O75150 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.26■□□□□ 0.35
RNF40O75150 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.26■□□□□ 0.35
RNF40O75150 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF40O75150 AC006213.4-201ENST00000616184 634 ntBASIC17.26■□□□□ 0.35
RNF40O75150 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF40O75150 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF40O75150 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF40O75150 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF40O75150 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RNF40O75150 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.26■□□□□ 0.35
RNF40O75150 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF40O75150 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF40O75150 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF40O75150 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RNF40O75150 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 HMGA1P7-201ENST00000406908 502 ntBASIC17.25■□□□□ 0.35
RNF40O75150 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 INGX-202ENST00000489074 768 ntBASIC17.25■□□□□ 0.35
RNF40O75150 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF40O75150 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 AC051619.7-201ENST00000568314 623 ntBASIC17.25■□□□□ 0.35
RNF40O75150 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 AL161645.1-201ENST00000622716 1255 ntBASIC17.25■□□□□ 0.35
RNF40O75150 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF40O75150 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RNF40O75150 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF40O75150 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 TUBB3P1-201ENST00000405796 1332 ntBASIC17.24■□□□□ 0.35
RNF40O75150 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 AC026748.1-201ENST00000624349 3251 ntBASIC17.24■□□□□ 0.35
RNF40O75150 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 MIR943-201ENST00000401286 94 ntBASIC17.24■□□□□ 0.35
RNF40O75150 GPS2P2-201ENST00000430745 888 ntBASIC17.24■□□□□ 0.35
RNF40O75150 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 SPCS2P4-201ENST00000436160 681 ntBASIC17.24■□□□□ 0.35
RNF40O75150 RBPMS2P1-201ENST00000437762 623 ntBASIC17.24■□□□□ 0.35
RNF40O75150 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.24■□□□□ 0.35
RNF40O75150 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 AL512356.2-201ENST00000546955 174 ntBASIC17.24■□□□□ 0.35
RNF40O75150 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF40O75150 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF40O75150 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.24■□□□□ 0.35
RNF40O75150 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF40O75150 AP001059.3-201ENST00000619053 235 ntBASIC17.24■□□□□ 0.35
RNF40O75150 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms