Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 AC007967.2-201ENST00000432613 625 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 RHOQP3-201ENST00000437982 621 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 RPL13AP23-201ENST00000480739 586 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.6□□□□□ -0.23
SDCBPO00560 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 AC145285.3-201ENST00000564603 959 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 AC064836.3-201ENST00000607928 673 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 OR2I1P-209ENST00000641730 5365 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 SNX18-202ENST00000343017 3140 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 CICP24-201ENST00000605464 2705 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
SDCBPO00560 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 BCAR1-209ENST00000546196 1340 ntBASIC13.6□□□□□ -0.23
SDCBPO00560 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.6□□□□□ -0.23
SDCBPO00560 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 AC092127.1-201ENST00000567093 3455 ntBASIC13.59□□□□□ -0.23
SDCBPO00560 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.59□□□□□ -0.23
SDCBPO00560 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms