Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TMX2-CTNND1H3BSU7 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 MEP1AP4-201ENST00000423244 1087 ntBASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 CICP13-201ENST00000422015 2789 ntBASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
TMX2-CTNND1H3BSU7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC138969.3-201ENST00000546612 1459 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC138932.2-201ENST00000548268 1459 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC126755.4-201ENST00000549796 1459 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AP006294.1-201ENST00000415407 339 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AL080243.2-201ENST00000418783 582 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 GPR53P-205ENST00000457298 1084 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 API5-211ENST00000534695 560 ntTSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TMX2-CTNND1H3BSU7 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 AL009178.2-201ENST00000597278 2719 ntBASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TMX2-CTNND1H3BSU7 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms