Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC006486.2-201ENST00000624246 2199 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AL109954.1-202ENST00000564051 2148 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AC134407.2-201ENST00000625089 1978 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AC079140.1-201ENST00000508039 487 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AP000344.2-201ENST00000512987 629 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 KRT8P48-201ENST00000515599 1220 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AC105233.2-201ENST00000523697 349 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AF228730.5-201ENST00000530288 346 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 KRT8P23-201ENST00000560090 1207 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AC008267.7-201ENST00000624570 1194 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AL513477.1-201ENST00000602865 2407 ntBASIC12.91□□□□□ -0.34
FOXA2Q9Y261 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AL592309.1-201ENST00000443127 649 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC243562.1-201ENST00000560672 389 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC027307.2-201ENST00000591252 911 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC022145.2-201ENST00000598203 171 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC004835.2-201ENST00000603762 682 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AL513210.1-201ENST00000629608 234 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC105339.1-204ENST00000636249 355 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC134684.3-201ENST00000641758 218 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms