Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AC018892.3-201ENST00000623986 2499 ntBASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 OR8S1-201ENST00000310194 1080 ntBASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AC004987.2-201ENST00000395959 1148 ntBASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AC140878.1-201ENST00000565277 250 ntBASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 AL589739.1-201ENST00000607720 493 ntBASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CUEDC1Q9NWM3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PAUPAR-201ENST00000630360 2965 ntBASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 TREML5P-201ENST00000421694 576 ntBASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 AL079307.3-201ENST00000556114 283 ntBASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CUEDC1Q9NWM3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms