Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 AC134407.2-201ENST00000625089 1978 ntBASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.83■□□□□ 0.13
TRIM39Q9HCM9 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 RN7SL618P-201ENST00000477850 296 ntBASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 AL844908.2-201ENST00000609461 460 ntBASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TRIM39Q9HCM9 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AC068587.6-202ENST00000641839 5619 ntBASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AC009477.1-201ENST00000452936 217 ntBASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 ZNF890P-202ENST00000530367 1156 ntBASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AL512361.1-201ENST00000554200 418 ntBASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AC022144.1-201ENST00000602255 1580 ntBASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms