Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 NAT9-222ENST00000583476 583 ntTSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 KLK3-207ENST00000595952 969 ntTSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 AC022748.3-201ENST00000621828 275 ntBASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 NDUFAB1P1-201ENST00000404262 460 ntBASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 HLA-K-203ENST00000430151 1046 ntBASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 FTLP10-202ENST00000505798 471 ntBASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 OR10B1P-201ENST00000601666 907 ntBASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK3Q9BYB0 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 AC100850.1-201ENST00000506768 649 ntBASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 COX5BP1-201ENST00000507622 393 ntBASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 CDK7-214ENST00000626796 358 ntTSL 5 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK3Q9BYB0 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK3Q9BYB0 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AC084364.1-201ENST00000551967 1556 ntBASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AC114812.1-204ENST00000449669 728 ntBASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms