Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC112693.3-201ENST00000624819 1983 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 AC009090.5-201ENST00000624886 2285 ntBASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 AC006058.4-201ENST00000624016 1670 ntBASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 AC027612.4-201ENST00000605371 583 ntBASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 MIR6080-201ENST00000617359 66 ntBASIC15.52■□□□□ 0.08
PDLIM5Q96HC4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PDLIM5Q96HC4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 MTND6P24-201ENST00000440466 518 ntBASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 SNHG9-202ENST00000564014 471 ntBASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM5Q96HC4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM5Q96HC4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms