Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 BRI3BPP1-201ENST00000594224 787 ntBASIC15.45■□□□□ 0.06
LMX1AQ8TE12 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 AC133552.6-201ENST00000613406 534 ntBASIC15.45■□□□□ 0.06
LMX1AQ8TE12 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
LMX1AQ8TE12 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AC136604.1-201ENST00000418535 575 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 RPL13AP25-201ENST00000484130 612 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 SLC25A47P1-201ENST00000531577 414 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AC233724.13-201ENST00000598383 410 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 MIR6775-201ENST00000617557 69 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 RPSAP52-203ENST00000622976 1023 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AC018665.1-201ENST00000622927 1362 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 AL607033.1-201ENST00000623900 1599 ntBASIC15.44■□□□□ 0.06
LMX1AQ8TE12 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1AQ8TE12 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 BOLA2P3-201ENST00000404566 256 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 KRT223P-202ENST00000449164 1292 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 USP32P1-208ENST00000506594 1164 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 SNX29P1-201ENST00000548357 1007 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 AP005482.1-201ENST00000563722 1273 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 MIR4259-201ENST00000584466 101 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 AL049840.4-201ENST00000602422 811 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 COX11-210ENST00000639671 696 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 INTS4P2-202ENST00000614726 2019 ntBASIC15.43■□□□□ 0.06
LMX1AQ8TE12 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms