Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 CICP13-201ENST00000422015 2789 ntBASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 AL162727.3-201ENST00000635661 2787 ntBASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 FO393414.2-201ENST00000405153 598 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 AZGP1P1-201ENST00000411909 902 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 AC025678.2-201ENST00000562061 970 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 AC139530.3-201ENST00000620344 690 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 MST1L-201ENST00000442552 2185 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC65Q8IXS2 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 KRT8P12-202ENST00000472924 1397 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 CNN2P2-201ENST00000443536 909 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 CNN2P3-201ENST00000450201 906 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AL079307.3-201ENST00000556114 283 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AL589739.1-201ENST00000607720 493 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AL136317.3-201ENST00000618497 906 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 Z92544.3-201ENST00000624747 417 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 CETN4P-206ENST00000642099 2168 ntBASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC65Q8IXS2 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC65Q8IXS2 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms