Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL353732.1-201ENST00000569618 1459 ntBASIC9.88□□□□□ -0.83
LINC00643Q86TS7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 NME4-202ENST00000382940 766 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ABHD17AP6-201ENST00000458502 1044 ntBASIC9.88□□□□□ -0.83
LINC00643Q86TS7 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 MIR4466-201ENST00000606121 54 ntBASIC9.88□□□□□ -0.83
LINC00643Q86TS7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 AL135905.2-201ENST00000584934 1404 ntBASIC9.88□□□□□ -0.83
LINC00643Q86TS7 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TSN-212ENST00000536142 3328 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 SRR-208ENST00000576848 588 ntTSL 4 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC9.87□□□□□ -0.83
LINC00643Q86TS7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 AC092053.3-201ENST00000641308 4975 ntBASIC9.87□□□□□ -0.83
LINC00643Q86TS7 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC9.87□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms