Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC005052.1-201ENST00000625181 2492 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 FAM220BP-201ENST00000377689 816 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 PRYP6-201ENST00000514804 343 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 MIR4492-201ENST00000581627 80 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 AP001350.2-201ENST00000625104 1094 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 AC004461.2-201ENST00000629517 803 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
COL28A1Q2UY09 AL603756.1-201ENST00000606511 2163 ntBASIC15.34■□□□□ 0.05
COL28A1Q2UY09 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.33■□□□□ 0.05
COL28A1Q2UY09 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 AGGF1P2-201ENST00000426656 2106 ntBASIC15.33■□□□□ 0.04
COL28A1Q2UY09 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 MPRIPP1-201ENST00000452433 1089 ntBASIC15.33■□□□□ 0.04
COL28A1Q2UY09 AL589987.1-201ENST00000453380 819 ntBASIC15.33■□□□□ 0.04
COL28A1Q2UY09 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 ZNF767P-206ENST00000513792 565 ntBASIC15.33■□□□□ 0.04
COL28A1Q2UY09 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 MIR8072-201ENST00000614241 80 ntBASIC15.33■□□□□ 0.04
COL28A1Q2UY09 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL28A1Q2UY09 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms