Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HIST1H1AQ02539 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 U82695.1-201ENST00000635752 1889 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 MRPL3P1-201ENST00000400109 1033 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 PMS2P4-201ENST00000412466 1052 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 AC009947.1-201ENST00000444350 727 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 RNA5SP415-201ENST00000517246 115 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 AL662844.1-201ENST00000546340 181 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 KRT126P-201ENST00000549467 1181 ntBASIC12.28□□□□□ -0.44
HIST1H1AQ02539 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HIST1H1AQ02539 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
HIST1H1AQ02539 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HIST1H1AQ02539 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms