Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CL1P78423 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.9□□□□□ -0.34
CX3CL1P78423 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 MIR648-201ENST00000385046 94 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 AC004461.1-201ENST00000412461 403 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.9□□□□□ -0.34
CX3CL1P78423 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 AP000344.2-201ENST00000512987 629 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 SLC25A39P2-201ENST00000537614 270 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 AC024267.1-201ENST00000582320 895 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 AC004835.2-201ENST00000603762 682 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 AC084121.4-201ENST00000641598 221 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 AF228730.8-201ENST00000642140 221 ntBASIC12.9□□□□□ -0.34
CX3CL1P78423 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
CX3CL1P78423 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CL1P78423 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.9□□□□□ -0.34
CX3CL1P78423 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CL1P78423 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
CX3CL1P78423 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
CX3CL1P78423 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.89□□□□□ -0.35
CX3CL1P78423 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.89□□□□□ -0.35
CX3CL1P78423 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.89□□□□□ -0.35
CX3CL1P78423 MIR4321-201ENST00000592276 80 ntBASIC12.89□□□□□ -0.35
CX3CL1P78423 AC055717.3-201ENST00000622967 595 ntBASIC12.89□□□□□ -0.35
CX3CL1P78423 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 AC134684.3-201ENST00000641758 218 ntBASIC12.89□□□□□ -0.35
CX3CL1P78423 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CL1P78423 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CL1P78423 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms