Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 PRAL-201ENST00000624952 3286 ntBASIC13.68□□□□□ -0.22
ABCA4P78363 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 AC093525.8-201ENST00000624099 1342 ntBASIC13.68□□□□□ -0.22
ABCA4P78363 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
ABCA4P78363 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
ABCA4P78363 GOLGA2P4-201ENST00000441462 777 ntBASIC13.68□□□□□ -0.22
ABCA4P78363 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.68□□□□□ -0.22
ABCA4P78363 RHOQP1-201ENST00000555758 579 ntBASIC13.68□□□□□ -0.22
ABCA4P78363 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.68□□□□□ -0.22
ABCA4P78363 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.68□□□□□ -0.22
ABCA4P78363 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.67□□□□□ -0.22
ABCA4P78363 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.67□□□□□ -0.22
ABCA4P78363 TDH-203ENST00000531764 1110 ntBASIC13.67□□□□□ -0.22
ABCA4P78363 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 MIR5189-201ENST00000577370 114 ntBASIC13.67□□□□□ -0.22
ABCA4P78363 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
ABCA4P78363 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 AC106886.4-201ENST00000623557 2502 ntBASIC13.67□□□□□ -0.22
ABCA4P78363 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.67□□□□□ -0.22
ABCA4P78363 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 AC092364.2-201ENST00000596710 2692 ntBASIC13.67□□□□□ -0.22
ABCA4P78363 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.67□□□□□ -0.22
ABCA4P78363 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 AC004987.2-201ENST00000395959 1148 ntBASIC13.67□□□□□ -0.22
ABCA4P78363 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.67□□□□□ -0.22
ABCA4P78363 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.67□□□□□ -0.22
ABCA4P78363 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.67□□□□□ -0.22
ABCA4P78363 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
ABCA4P78363 AC243960.2-201ENST00000600996 747 ntBASIC13.67□□□□□ -0.22
ABCA4P78363 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA4P78363 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
ABCA4P78363 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms