Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.11■□□□□ 0.01
LIM2P55344 RFPL4AP1-201ENST00000530883 850 ntBASIC15.11■□□□□ 0.01
LIM2P55344 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.11■□□□□ 0.01
LIM2P55344 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.11■□□□□ 0.01
LIM2P55344 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.11■□□□□ 0.01
LIM2P55344 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.11■□□□□ 0.01
LIM2P55344 AL158211.3-201ENST00000607385 239 ntBASIC15.11■□□□□ 0.01
LIM2P55344 AC093512.1-201ENST00000617969 520 ntBASIC15.11■□□□□ 0.01
LIM2P55344 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 AC018892.3-201ENST00000623986 2499 ntBASIC15.11■□□□□ 0.01
LIM2P55344 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LIM2P55344 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LIM2P55344 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LIM2P55344 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.1■□□□□ 0.01
LIM2P55344 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LIM2P55344 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.1■□□□□ 0.01
LIM2P55344 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.1■□□□□ 0.01
LIM2P55344 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
LIM2P55344 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 AC092580.3-201ENST00000430932 139 ntBASIC15.1■□□□□ 0.01
LIM2P55344 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 AC097493.3-201ENST00000509725 367 ntBASIC15.1■□□□□ 0.01
LIM2P55344 AC027369.6-201ENST00000525520 931 ntBASIC15.1■□□□□ 0.01
LIM2P55344 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.1■□□□□ 0.01
LIM2P55344 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.1■□□□□ 0.01
LIM2P55344 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.1■□□□□ 0.01
LIM2P55344 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.1■□□□□ 0.01
LIM2P55344 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
LIM2P55344 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIM2P55344 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 AC022532.1-201ENST00000624563 1728 ntBASIC15.09■□□□□ 0.01
LIM2P55344 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
LIM2P55344 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.09■□□□□ 0.01
LIM2P55344 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.09■□□□□ 0.01
LIM2P55344 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LIM2P55344 FO393414.2-201ENST00000405153 598 ntBASIC15.09■□□□□ 0.01
LIM2P55344 AZGP1P1-201ENST00000411909 902 ntBASIC15.09■□□□□ 0.01
LIM2P55344 HIST3H2BA-201ENST00000436555 524 ntBASIC15.09■□□□□ 0.01
LIM2P55344 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.09■□□□□ 0.01
LIM2P55344 AL450472.2-201ENST00000603663 1156 ntBASIC15.09■□□□□ 0.01
LIM2P55344 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 TEX28P1-201ENST00000613479 1221 ntBASIC15.09■□□□□ 0.01
LIM2P55344 TEX28P2-201ENST00000617764 1221 ntBASIC15.09■□□□□ 0.01
LIM2P55344 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.09■□□□□ 0.01
LIM2P55344 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 AP003680.1-201ENST00000598970 3660 ntBASIC15.09■□□□□ 0.01
LIM2P55344 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LIM2P55344 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIM2P55344 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms