Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HOXA1P49639 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXA1P49639 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXA1P49639 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXA1P49639 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.32□□□□□ -0.28
HOXA1P49639 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HOXA1P49639 AC087163.2-201ENST00000457299 853 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXA1P49639 AC106795.1-205ENST00000512851 1056 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXA1P49639 AL603832.2-201ENST00000566195 2125 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXA1P49639 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 NPAP1P7-201ENST00000613027 823 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 AP001350.2-201ENST00000625104 1094 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXA1P49639 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HOXA1P49639 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HOXA1P49639 TCAF1P1-201ENST00000414990 2232 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 AC099521.3-201ENST00000624251 2938 ntBASIC13.32□□□□□ -0.28
HOXA1P49639 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
HOXA1P49639 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 LINC01144-201ENST00000626198 1710 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 REXO1L1P-202ENST00000608646 1974 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 AC010491.1-201ENST00000563101 2797 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 GPAA1P2-202ENST00000606848 1787 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 PAWRP1-201ENST00000451083 565 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 RMI2-205ENST00000576027 818 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
HOXA1P49639 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 AL732292.2-201ENST00000609649 430 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 AF228730.7-201ENST00000641842 219 ntBASIC13.31□□□□□ -0.28
HOXA1P49639 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXA1P49639 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms