Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.16■□□□□ 0.34
TNFSF9P41273 CHCHD2P3-201ENST00000603038 451 ntBASIC17.16■□□□□ 0.34
TNFSF9P41273 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.16■□□□□ 0.34
TNFSF9P41273 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TNFSF9P41273 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.16■□□□□ 0.34
TNFSF9P41273 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFSF9P41273 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TNFSF9P41273 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFSF9P41273 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.16■□□□□ 0.34
TNFSF9P41273 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.16■□□□□ 0.34
TNFSF9P41273 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFSF9P41273 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFSF9P41273 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TNFSF9P41273 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TNFSF9P41273 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
TNFSF9P41273 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.16■□□□□ 0.34
TNFSF9P41273 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 AP005117.1-202ENST00000581724 1908 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TNFSF9P41273 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFSF9P41273 CICP13-201ENST00000422015 2789 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
TNFSF9P41273 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 AC015922.1-201ENST00000421102 1152 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.15■□□□□ 0.34
TNFSF9P41273 COX20P2-201ENST00000452636 358 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 SLED1-202ENST00000512051 380 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
TNFSF9P41273 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.15■□□□□ 0.34
TNFSF9P41273 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFSF9P41273 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFSF9P41273 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFSF9P41273 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFSF9P41273 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 SLC7A15P-201ENST00000424028 1363 ntBASIC17.15■□□□□ 0.34
TNFSF9P41273 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFSF9P41273 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.14■□□□□ 0.33
TNFSF9P41273 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFSF9P41273 PAUPAR-201ENST00000630360 2965 ntBASIC17.14■□□□□ 0.33
TNFSF9P41273 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TNFSF9P41273 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TNFSF9P41273 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFSF9P41273 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.14■□□□□ 0.33
TNFSF9P41273 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFSF9P41273 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
TNFSF9P41273 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFSF9P41273 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.14■□□□□ 0.33
TNFSF9P41273 AC093004.1-201ENST00000508850 424 ntBASIC17.14■□□□□ 0.33
TNFSF9P41273 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.14■□□□□ 0.33
TNFSF9P41273 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.14■□□□□ 0.33
TNFSF9P41273 SPDYE22P-201ENST00000582158 798 ntBASIC17.14■□□□□ 0.33
TNFSF9P41273 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.14■□□□□ 0.33
TNFSF9P41273 AL391069.4-201ENST00000609583 481 ntBASIC17.14■□□□□ 0.33
TNFSF9P41273 AL662799.1-202ENST00000614205 422 ntBASIC17.14■□□□□ 0.33
TNFSF9P41273 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFSF9P41273 AL158212.4-201ENST00000624062 1286 ntBASIC17.14■□□□□ 0.33
TNFSF9P41273 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFSF9P41273 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.14■□□□□ 0.33
TNFSF9P41273 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFSF9P41273 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.13■□□□□ 0.33
TNFSF9P41273 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TNFSF9P41273 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFSF9P41273 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.13■□□□□ 0.33
TNFSF9P41273 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms