Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 AC027612.4-201ENST00000605371 583 ntBASIC15.51■□□□□ 0.07
HNF4AP41235 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HNF4AP41235 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
HNF4AP41235 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HNF4AP41235 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.5■□□□□ 0.07
HNF4AP41235 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.5■□□□□ 0.07
HNF4AP41235 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.5■□□□□ 0.07
HNF4AP41235 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 AC004987.2-201ENST00000395959 1148 ntBASIC15.5■□□□□ 0.07
HNF4AP41235 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.5■□□□□ 0.07
HNF4AP41235 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.5■□□□□ 0.07
HNF4AP41235 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.5■□□□□ 0.07
HNF4AP41235 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.5■□□□□ 0.07
HNF4AP41235 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
HNF4AP41235 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.5■□□□□ 0.07
HNF4AP41235 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.5■□□□□ 0.07
HNF4AP41235 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
HNF4AP41235 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HNF4AP41235 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.5■□□□□ 0.07
HNF4AP41235 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
HNF4AP41235 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HNF4AP41235 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 AC126755.1-201ENST00000525846 6405 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.49■□□□□ 0.07
HNF4AP41235 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
HNF4AP41235 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.49■□□□□ 0.07
HNF4AP41235 AL139010.1-201ENST00000454878 894 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.49■□□□□ 0.07
HNF4AP41235 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.49■□□□□ 0.07
HNF4AP41235 ALG1L8P-201ENST00000533887 760 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.49■□□□□ 0.07
HNF4AP41235 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
HNF4AP41235 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.49■□□□□ 0.07
HNF4AP41235 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 AP001160.2-201ENST00000596071 487 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 AC026979.3-201ENST00000607315 403 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms