Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFC3P40938 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFC3P40938 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.63□□□□□ -0.07
RFC3P40938 AC063926.2-201ENST00000623766 1308 ntBASIC14.63□□□□□ -0.07
RFC3P40938 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFC3P40938 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.63□□□□□ -0.07
RFC3P40938 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFC3P40938 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFC3P40938 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.62□□□□□ -0.07
RFC3P40938 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 AL592424.1-201ENST00000563624 1536 ntBASIC14.62□□□□□ -0.07
RFC3P40938 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
RFC3P40938 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.62□□□□□ -0.07
RFC3P40938 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.62□□□□□ -0.07
RFC3P40938 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.62□□□□□ -0.07
RFC3P40938 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.62□□□□□ -0.07
RFC3P40938 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RFC3P40938 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.62□□□□□ -0.07
RFC3P40938 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.62□□□□□ -0.07
RFC3P40938 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFC3P40938 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
RFC3P40938 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.61□□□□□ -0.07
RFC3P40938 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.61□□□□□ -0.07
RFC3P40938 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 API5-211ENST00000534695 560 ntTSL 5 BASIC14.61□□□□□ -0.07
RFC3P40938 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
RFC3P40938 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.61□□□□□ -0.07
RFC3P40938 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RFC3P40938 LINC02228-204ENST00000642115 2962 ntBASIC14.61□□□□□ -0.07
RFC3P40938 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.61□□□□□ -0.07
RFC3P40938 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 BTBD7P1-201ENST00000447253 1453 ntBASIC14.61□□□□□ -0.07
RFC3P40938 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.61□□□□□ -0.07
RFC3P40938 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.61□□□□□ -0.07
RFC3P40938 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RFC3P40938 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RFC3P40938 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RFC3P40938 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFC3P40938 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.61□□□□□ -0.07
RFC3P40938 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFC3P40938 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.6□□□□□ -0.07
RFC3P40938 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.6□□□□□ -0.07
RFC3P40938 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFC3P40938 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms