Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 AC112482.1-201ENST00000492080 688 ntBASIC12.2□□□□□ -0.46
HLA-DMBP28068 PRYP6-201ENST00000514804 343 ntBASIC12.2□□□□□ -0.46
HLA-DMBP28068 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 AL513190.1-201ENST00000621254 727 ntBASIC12.2□□□□□ -0.46
HLA-DMBP28068 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 AC020658.6-201ENST00000623564 1870 ntBASIC12.19□□□□□ -0.46
HLA-DMBP28068 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 AL365330.1-201ENST00000607459 531 ntBASIC12.19□□□□□ -0.46
HLA-DMBP28068 AC092865.6-201ENST00000642101 219 ntBASIC12.19□□□□□ -0.46
HLA-DMBP28068 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.19□□□□□ -0.46
HLA-DMBP28068 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 WASH6P-202ENST00000359512 1437 ntBASIC12.19□□□□□ -0.46
HLA-DMBP28068 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
HLA-DMBP28068 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DMBP28068 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms