Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC19.56■□□□□ 0.72
COL5A3P25940 HNRNPA1P63-201ENST00000427917 963 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A3P25940 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.56■□□□□ 0.72
COL5A3P25940 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC19.56■□□□□ 0.72
COL5A3P25940 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A3P25940 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A3P25940 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.56■□□□□ 0.72
COL5A3P25940 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC19.56■□□□□ 0.72
COL5A3P25940 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A3P25940 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.55■□□□□ 0.72
COL5A3P25940 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.55■□□□□ 0.72
COL5A3P25940 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.55■□□□□ 0.72
COL5A3P25940 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 HLA-K-203ENST00000430151 1046 ntBASIC19.55■□□□□ 0.72
COL5A3P25940 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.55■□□□□ 0.72
COL5A3P25940 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 AC004466.1-201ENST00000599515 1080 ntBASIC19.55■□□□□ 0.72
COL5A3P25940 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC19.55■□□□□ 0.72
COL5A3P25940 AC022211.2-201ENST00000585075 2527 ntBASIC19.55■□□□□ 0.72
COL5A3P25940 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A3P25940 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A3P25940 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 TPM3P8-201ENST00000330554 643 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 CHMP1AP1-201ENST00000445563 662 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 RN7SL720P-201ENST00000488178 304 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.54■□□□□ 0.72
COL5A3P25940 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.54■□□□□ 0.72
COL5A3P25940 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 AC018635.2-201ENST00000608625 364 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL5A3P25940 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
COL5A3P25940 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A3P25940 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.54■□□□□ 0.72
COL5A3P25940 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC19.54■□□□□ 0.72
COL5A3P25940 CFL1-214ENST00000534769 758 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A3P25940 DUX4L47-201ENST00000566374 394 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A3P25940 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.54■□□□□ 0.72
COL5A3P25940 AP000346.4-201ENST00000614827 381 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 AC079336.7-201ENST00000623428 1078 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 AL603764.1-201ENST00000636452 321 ntBASIC19.54■□□□□ 0.72
COL5A3P25940 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms