Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
XRCC1P18887 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.94■□□□□ 0.14
XRCC1P18887 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.94■□□□□ 0.14
XRCC1P18887 AC112504.1-201ENST00000623415 1841 ntBASIC15.94■□□□□ 0.14
XRCC1P18887 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
XRCC1P18887 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
XRCC1P18887 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.93■□□□□ 0.14
XRCC1P18887 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.93■□□□□ 0.14
XRCC1P18887 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 RNA5SP421-201ENST00000516864 134 ntBASIC15.93■□□□□ 0.14
XRCC1P18887 AC069120.2-201ENST00000524091 540 ntBASIC15.93■□□□□ 0.14
XRCC1P18887 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.93■□□□□ 0.14
XRCC1P18887 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 SPCS2P1-201ENST00000561636 679 ntBASIC15.93■□□□□ 0.14
XRCC1P18887 AC024267.1-201ENST00000582320 895 ntBASIC15.93■□□□□ 0.14
XRCC1P18887 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 CDC14C-201ENST00000428251 1719 ntBASIC15.93■□□□□ 0.14
XRCC1P18887 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.93■□□□□ 0.14
XRCC1P18887 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 AL589702.1-201ENST00000641229 1509 ntBASIC15.93■□□□□ 0.14
XRCC1P18887 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
XRCC1P18887 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
XRCC1P18887 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
XRCC1P18887 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.92■□□□□ 0.14
XRCC1P18887 AL035456.1-201ENST00000456064 1369 ntBASIC15.92■□□□□ 0.14
XRCC1P18887 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.92■□□□□ 0.14
XRCC1P18887 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.92■□□□□ 0.14
XRCC1P18887 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.92■□□□□ 0.14
XRCC1P18887 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 RNA5SP410-201ENST00000516285 106 ntBASIC15.92■□□□□ 0.14
XRCC1P18887 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.92■□□□□ 0.14
XRCC1P18887 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.92■□□□□ 0.14
XRCC1P18887 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.92■□□□□ 0.14
XRCC1P18887 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.92■□□□□ 0.14
XRCC1P18887 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
XRCC1P18887 AL096865.1-201ENST00000606796 927 ntBASIC15.92■□□□□ 0.14
XRCC1P18887 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.92■□□□□ 0.14
XRCC1P18887 LINC02447-202ENST00000501888 2146 ntBASIC15.92■□□□□ 0.14
XRCC1P18887 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
XRCC1P18887 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
XRCC1P18887 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.92■□□□□ 0.14
XRCC1P18887 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
XRCC1P18887 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
XRCC1P18887 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.91■□□□□ 0.14
XRCC1P18887 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.91■□□□□ 0.14
XRCC1P18887 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
XRCC1P18887 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
XRCC1P18887 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
XRCC1P18887 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
XRCC1P18887 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
XRCC1P18887 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
XRCC1P18887 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
XRCC1P18887 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
XRCC1P18887 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms