Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.97■□□□□ 0.15
SHOX2O60902 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.97■□□□□ 0.15
SHOX2O60902 AC063952.2-201ENST00000498792 1227 ntBASIC15.97■□□□□ 0.15
SHOX2O60902 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.97■□□□□ 0.15
SHOX2O60902 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
SHOX2O60902 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 WASH3P-207ENST00000560956 1394 ntBASIC15.97■□□□□ 0.15
SHOX2O60902 FO538757.1-201ENST00000623083 1397 ntBASIC15.97■□□□□ 0.15
SHOX2O60902 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.97■□□□□ 0.15
SHOX2O60902 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.96■□□□□ 0.15
SHOX2O60902 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
SHOX2O60902 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.96■□□□□ 0.15
SHOX2O60902 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.96■□□□□ 0.15
SHOX2O60902 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SHOX2O60902 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.96■□□□□ 0.15
SHOX2O60902 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
SHOX2O60902 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 IGHV3-41-201ENST00000613121 348 ntBASIC15.96■□□□□ 0.15
SHOX2O60902 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.96■□□□□ 0.15
SHOX2O60902 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SHOX2O60902 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
SHOX2O60902 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHOX2O60902 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
SHOX2O60902 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SHOX2O60902 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SHOX2O60902 TP73-AS1-210ENST00000637775 1455 ntBASIC15.96■□□□□ 0.14
SHOX2O60902 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
SHOX2O60902 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.95■□□□□ 0.14
SHOX2O60902 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.95■□□□□ 0.14
SHOX2O60902 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SHOX2O60902 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC15.95■□□□□ 0.14
SHOX2O60902 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
SHOX2O60902 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SHOX2O60902 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
SHOX2O60902 AC091607.1-201ENST00000490318 1060 ntBASIC15.95■□□□□ 0.14
SHOX2O60902 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 AC022616.7-201ENST00000525383 220 ntBASIC15.95■□□□□ 0.14
SHOX2O60902 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.95■□□□□ 0.14
SHOX2O60902 MIR4313-201ENST00000580760 101 ntBASIC15.95■□□□□ 0.14
SHOX2O60902 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.95■□□□□ 0.14
SHOX2O60902 AC010331.1-201ENST00000611423 582 ntBASIC15.95■□□□□ 0.14
SHOX2O60902 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.95■□□□□ 0.14
SHOX2O60902 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
SHOX2O60902 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.95■□□□□ 0.14
SHOX2O60902 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHOX2O60902 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
SHOX2O60902 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms