Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
LDB2O43679 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LDB2O43679 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 HLA-V-204ENST00000476601 1289 ntBASIC15.9■□□□□ 0.14
LDB2O43679 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB2O43679 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.9■□□□□ 0.14
LDB2O43679 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.9■□□□□ 0.14
LDB2O43679 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.9■□□□□ 0.14
LDB2O43679 AC106028.4-201ENST00000614509 607 ntBASIC15.9■□□□□ 0.14
LDB2O43679 SPDYE12P-201ENST00000618416 771 ntBASIC15.9■□□□□ 0.14
LDB2O43679 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB2O43679 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB2O43679 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB2O43679 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LDB2O43679 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB2O43679 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LDB2O43679 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LDB2O43679 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB2O43679 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB2O43679 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB2O43679 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
LDB2O43679 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
LDB2O43679 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB2O43679 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 AC022532.1-201ENST00000624563 1728 ntBASIC15.89■□□□□ 0.13
LDB2O43679 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 PPT1-215ENST00000641471 2368 ntBASIC15.89■□□□□ 0.13
LDB2O43679 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LDB2O43679 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LDB2O43679 AL645939.2-201ENST00000427340 991 ntBASIC15.89■□□□□ 0.13
LDB2O43679 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 KLF2P3-201ENST00000451977 1087 ntBASIC15.89■□□□□ 0.13
LDB2O43679 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB2O43679 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.89■□□□□ 0.13
LDB2O43679 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.89■□□□□ 0.13
LDB2O43679 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
LDB2O43679 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB2O43679 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.89■□□□□ 0.13
LDB2O43679 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.89■□□□□ 0.13
LDB2O43679 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB2O43679 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LDB2O43679 FO538757.1-201ENST00000623083 1397 ntBASIC15.88■□□□□ 0.13
LDB2O43679 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.88■□□□□ 0.13
LDB2O43679 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 AC073347.1-201ENST00000421633 2643 ntBASIC15.88■□□□□ 0.13
LDB2O43679 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.88■□□□□ 0.13
LDB2O43679 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.88■□□□□ 0.13
LDB2O43679 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.88■□□□□ 0.13
LDB2O43679 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.88■□□□□ 0.13
LDB2O43679 AC125807.1-201ENST00000483097 614 ntBASIC15.88■□□□□ 0.13
LDB2O43679 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.88■□□□□ 0.13
LDB2O43679 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
LDB2O43679 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB2O43679 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.88■□□□□ 0.13
LDB2O43679 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB2O43679 TEX28P1-201ENST00000613479 1221 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms