Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FAM86LP-201ENST00000478302 853 ntBASIC20.04■□□□□ 0.8
NPHP1O15259 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP1O15259 MIR5189-201ENST00000577370 114 ntBASIC20.04■□□□□ 0.8
NPHP1O15259 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.04■□□□□ 0.8
NPHP1O15259 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP1O15259 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP1O15259 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC20.03■□□□□ 0.8
NPHP1O15259 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NPHP1O15259 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP1O15259 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NPHP1O15259 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
NPHP1O15259 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 AZGP1P1-201ENST00000411909 902 ntBASIC20.03■□□□□ 0.8
NPHP1O15259 FAM21FP-201ENST00000426241 1131 ntBASIC20.03■□□□□ 0.8
NPHP1O15259 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.03■□□□□ 0.8
NPHP1O15259 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20.03■□□□□ 0.8
NPHP1O15259 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC20.03■□□□□ 0.8
NPHP1O15259 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
NPHP1O15259 PTP4A1P2-201ENST00000546033 454 ntBASIC20.03■□□□□ 0.8
NPHP1O15259 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.03■□□□□ 0.8
NPHP1O15259 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP1O15259 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 GGT3P-204ENST00000453783 1664 ntBASIC20.03■□□□□ 0.8
NPHP1O15259 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP1O15259 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP1O15259 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
NPHP1O15259 KRT8P37-201ENST00000451609 1420 ntBASIC20.02■□□□□ 0.8
NPHP1O15259 AC018695.7-201ENST00000624587 2492 ntBASIC20.02■□□□□ 0.8
NPHP1O15259 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP1O15259 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP1O15259 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP1O15259 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
NPHP1O15259 ACTG1P3-201ENST00000431775 1114 ntBASIC20.02■□□□□ 0.8
NPHP1O15259 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP1O15259 AL355864.2-201ENST00000447420 863 ntBASIC20.02■□□□□ 0.8
NPHP1O15259 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP1O15259 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.02■□□□□ 0.8
NPHP1O15259 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.02■□□□□ 0.8
NPHP1O15259 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP1O15259 AL359711.2-201ENST00000563105 872 ntBASIC20.02■□□□□ 0.8
NPHP1O15259 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC20.02■□□□□ 0.8
NPHP1O15259 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP1O15259 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
NPHP1O15259 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.02■□□□□ 0.8
NPHP1O15259 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP1O15259 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP1O15259 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
NPHP1O15259 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP1O15259 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
NPHP1O15259 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP1O15259 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP1O15259 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
NPHP1O15259 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP1O15259 AC005915.1-201ENST00000624912 2018 ntBASIC20.02■□□□□ 0.79
NPHP1O15259 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP1O15259 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.02■□□□□ 0.79
NPHP1O15259 AL691432.1-201ENST00000596308 1422 ntBASIC20.02■□□□□ 0.79
NPHP1O15259 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
NPHP1O15259 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
NPHP1O15259 SOCS2P1-201ENST00000417727 557 ntBASIC20.01■□□□□ 0.79
NPHP1O15259 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.01■□□□□ 0.79
NPHP1O15259 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP1O15259 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
NPHP1O15259 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms