Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 KRT8P21-201ENST00000430398 1491 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
COL6A5A8TX70 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
COL6A5A8TX70 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
COL6A5A8TX70 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC12.08□□□□□ -0.47
COL6A5A8TX70 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC12.08□□□□□ -0.47
COL6A5A8TX70 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC12.08□□□□□ -0.47
COL6A5A8TX70 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC12.08□□□□□ -0.47
COL6A5A8TX70 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC12.08□□□□□ -0.47
COL6A5A8TX70 AL160314.3-201ENST00000556041 767 ntBASIC12.08□□□□□ -0.47
COL6A5A8TX70 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC12.08□□□□□ -0.47
COL6A5A8TX70 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 AC009113.1-201ENST00000570267 2443 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 AP000974.1-201ENST00000623909 2387 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 AQP7P5-201ENST00000428759 1049 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 AQP7P4-201ENST00000447083 1042 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 AQP7P2-201ENST00000453967 1041 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 AP001002.3-201ENST00000623482 206 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 AQP7P3-201ENST00000624547 1041 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 AL603756.1-201ENST00000606511 2163 ntBASIC12.08□□□□□ -0.48
COL6A5A8TX70 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
COL6A5A8TX70 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.08□□□□□ -0.48
COL6A5A8TX70 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 LYPLA2P1-203ENST00000447689 696 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 DUT-207ENST00000559416 635 ntTSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AC005324.6-201ENST00000587972 613 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 AC073911.3-201ENST00000624401 631 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 LINC00431-202ENST00000636375 159 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 RHBDF1P1-201ENST00000427504 1941 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 GCSHP3-201ENST00000431120 391 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 AC024293.1-201ENST00000467930 498 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms