Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 AC018892.3-201ENST00000623986 2499 ntBASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.33■□□□□ 0.21
TRIM56Q9BRZ2 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM56Q9BRZ2 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
TRIM56Q9BRZ2 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.33■□□□□ 0.21
TRIM56Q9BRZ2 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM56Q9BRZ2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM56Q9BRZ2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 SSR4P1-203ENST00000599569 2260 ntBASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
TRIM56Q9BRZ2 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 AC092127.1-201ENST00000567093 3455 ntBASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 ZNF259P1-201ENST00000407656 1365 ntBASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 AC009090.5-201ENST00000624886 2285 ntBASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM56Q9BRZ2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms