Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RPRD1AQ96P16 BTBD7P1-201ENST00000447253 1453 ntBASIC16.42■□□□□ 0.22
RPRD1AQ96P16 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 PCDHA1-201ENST00000378133 2726 ntBASIC16.41■□□□□ 0.22
RPRD1AQ96P16 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC236430.1-201ENST00000402231 743 ntBASIC16.41■□□□□ 0.22
RPRD1AQ96P16 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC009118.2-201ENST00000613275 655 ntBASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC004840.1-201ENST00000636359 365 ntBASIC16.41■□□□□ 0.22
RPRD1AQ96P16 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RPRD1AQ96P16 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 AC112504.1-201ENST00000623415 1841 ntBASIC16.4■□□□□ 0.22
RPRD1AQ96P16 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 AC018695.7-201ENST00000624587 2492 ntBASIC16.4■□□□□ 0.22
RPRD1AQ96P16 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 RN7SL204P-201ENST00000582831 262 ntBASIC16.4■□□□□ 0.22
RPRD1AQ96P16 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.4■□□□□ 0.22
RPRD1AQ96P16 LINC02560-201ENST00000596379 459 ntBASIC16.4■□□□□ 0.22
RPRD1AQ96P16 AC074044.1-201ENST00000609673 707 ntBASIC16.4■□□□□ 0.22
RPRD1AQ96P16 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms