Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AL607033.1-201ENST00000623900 1599 ntBASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 AC069262.1-201ENST00000539058 672 ntBASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC006486.2-201ENST00000624246 2199 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AL109954.1-202ENST00000564051 2148 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC004967.1-201ENST00000453589 447 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AL079307.3-201ENST00000556114 283 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 AC023157.3-201ENST00000619086 2088 ntBASIC15.53■□□□□ 0.08
PDLIM5Q96HC4 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms