Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AC073347.1-201ENST00000421633 2643 ntBASIC15.36■□□□□ 0.05
VMP1Q96GC9 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AL031731.1-201ENST00000642131 2094 ntBASIC15.36■□□□□ 0.05
VMP1Q96GC9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 PRYP6-201ENST00000514804 343 ntBASIC15.36■□□□□ 0.05
VMP1Q96GC9 AC093520.2-201ENST00000561830 333 ntBASIC15.36■□□□□ 0.05
VMP1Q96GC9 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.36■□□□□ 0.05
VMP1Q96GC9 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AC013268.4-201ENST00000637413 2228 ntBASIC15.35■□□□□ 0.05
VMP1Q96GC9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AL009178.2-201ENST00000597278 2719 ntBASIC15.35■□□□□ 0.05
VMP1Q96GC9 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 AC084121.4-201ENST00000641598 221 ntBASIC15.35■□□□□ 0.05
VMP1Q96GC9 AF228730.8-201ENST00000642140 221 ntBASIC15.35■□□□□ 0.05
VMP1Q96GC9 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.35■□□□□ 0.05
VMP1Q96GC9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VMP1Q96GC9 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms