Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.01□□□□□ -0.33
VPS13CQ709C8 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 RN7SL181P-201ENST00000462921 277 ntBASIC13.01□□□□□ -0.33
VPS13CQ709C8 GAPDHP40-201ENST00000505218 1006 ntBASIC13.01□□□□□ -0.33
VPS13CQ709C8 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 AC097359.3-201ENST00000603982 1210 ntBASIC13.01□□□□□ -0.33
VPS13CQ709C8 AP000346.4-201ENST00000614827 381 ntBASIC13.01□□□□□ -0.33
VPS13CQ709C8 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 NUP210P1-202ENST00000504322 710 ntBASIC13.01□□□□□ -0.33
VPS13CQ709C8 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
VPS13CQ709C8 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13CQ709C8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC13□□□□□ -0.33
VPS13CQ709C8 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 AC005730.2-201ENST00000564549 1184 ntBASIC13□□□□□ -0.33
VPS13CQ709C8 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13□□□□□ -0.33
VPS13CQ709C8 AC018635.2-201ENST00000608625 364 ntBASIC13□□□□□ -0.33
VPS13CQ709C8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13□□□□□ -0.33
VPS13CQ709C8 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 AP003171.2-201ENST00000528208 925 ntBASIC13□□□□□ -0.33
VPS13CQ709C8 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13□□□□□ -0.33
VPS13CQ709C8 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 AL023775.1-201ENST00000454907 1746 ntBASIC13□□□□□ -0.33
VPS13CQ709C8 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13□□□□□ -0.33
VPS13CQ709C8 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 FTLP10-202ENST00000505798 471 ntBASIC13□□□□□ -0.33
VPS13CQ709C8 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13□□□□□ -0.33
VPS13CQ709C8 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13□□□□□ -0.33
VPS13CQ709C8 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13□□□□□ -0.33
VPS13CQ709C8 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13□□□□□ -0.33
VPS13CQ709C8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13CQ709C8 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
VPS13CQ709C8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13CQ709C8 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13CQ709C8 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13CQ709C8 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13CQ709C8 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13CQ709C8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13CQ709C8 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.99□□□□□ -0.33
VPS13CQ709C8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms