Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 AC024909.3-201ENST00000611513 2257 ntBASIC14.76□□□□□ -0.05
RNF4P78317 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.76□□□□□ -0.05
RNF4P78317 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.76□□□□□ -0.05
RNF4P78317 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
RNF4P78317 AC236430.1-201ENST00000402231 743 ntBASIC14.76□□□□□ -0.05
RNF4P78317 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.76□□□□□ -0.05
RNF4P78317 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
RNF4P78317 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.76□□□□□ -0.05
RNF4P78317 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.76□□□□□ -0.05
RNF4P78317 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.76□□□□□ -0.05
RNF4P78317 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.76□□□□□ -0.05
RNF4P78317 AC135586.1-201ENST00000539323 574 ntBASIC14.76□□□□□ -0.05
RNF4P78317 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 MIR3197-201ENST00000582241 73 ntBASIC14.76□□□□□ -0.05
RNF4P78317 RN7SL204P-201ENST00000582831 262 ntBASIC14.76□□□□□ -0.05
RNF4P78317 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.76□□□□□ -0.05
RNF4P78317 AC025048.3-201ENST00000590609 569 ntBASIC14.76□□□□□ -0.05
RNF4P78317 AC009118.2-201ENST00000613275 655 ntBASIC14.76□□□□□ -0.05
RNF4P78317 AC005702.4-201ENST00000618393 416 ntBASIC14.76□□□□□ -0.05
RNF4P78317 AC004840.1-201ENST00000636359 365 ntBASIC14.76□□□□□ -0.05
RNF4P78317 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.76□□□□□ -0.05
RNF4P78317 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
RNF4P78317 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RNF4P78317 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 AC018695.7-201ENST00000624587 2492 ntBASIC14.75□□□□□ -0.05
RNF4P78317 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 MIR661-201ENST00000384842 89 ntBASIC14.75□□□□□ -0.05
RNF4P78317 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 AC002472.2-201ENST00000442739 958 ntBASIC14.75□□□□□ -0.05
RNF4P78317 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.75□□□□□ -0.05
RNF4P78317 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.75□□□□□ -0.05
RNF4P78317 LINC02560-201ENST00000596379 459 ntBASIC14.75□□□□□ -0.05
RNF4P78317 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 AC074044.1-201ENST00000609673 707 ntBASIC14.75□□□□□ -0.05
RNF4P78317 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.75□□□□□ -0.05
RNF4P78317 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
RNF4P78317 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
RNF4P78317 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.75□□□□□ -0.05
RNF4P78317 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 AC092850.2-201ENST00000623821 2697 ntBASIC14.75□□□□□ -0.05
RNF4P78317 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms