Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CDH4P55283 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH4P55283 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH4P55283 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CDH4P55283 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH4P55283 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 AC018695.7-201ENST00000624587 2492 ntBASIC16.24■□□□□ 0.19
CDH4P55283 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 PCDHA1-201ENST00000378133 2726 ntBASIC16.24■□□□□ 0.19
CDH4P55283 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CDH4P55283 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH4P55283 AC015922.1-201ENST00000421102 1152 ntBASIC16.24■□□□□ 0.19
CDH4P55283 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH4P55283 AL589987.1-201ENST00000453380 819 ntBASIC16.24■□□□□ 0.19
CDH4P55283 MEIS3P1-201ENST00000495167 958 ntBASIC16.24■□□□□ 0.19
CDH4P55283 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH4P55283 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.24■□□□□ 0.19
CDH4P55283 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.24■□□□□ 0.19
CDH4P55283 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 AF228730.6-201ENST00000641497 218 ntBASIC16.24■□□□□ 0.19
CDH4P55283 AC084121.3-201ENST00000641716 218 ntBASIC16.24■□□□□ 0.19
CDH4P55283 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CDH4P55283 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CDH4P55283 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CDH4P55283 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CDH4P55283 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CDH4P55283 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH4P55283 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
CDH4P55283 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CDH4P55283 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH4P55283 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH4P55283 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH4P55283 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.23■□□□□ 0.19
CDH4P55283 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
CDH4P55283 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDH4P55283 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH4P55283 MEP1AP4-201ENST00000423244 1087 ntBASIC16.23■□□□□ 0.19
CDH4P55283 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 AC093004.1-201ENST00000508850 424 ntBASIC16.23■□□□□ 0.19
CDH4P55283 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.23■□□□□ 0.19
CDH4P55283 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH4P55283 TPRX2P-201ENST00000535362 881 ntBASIC16.23■□□□□ 0.19
CDH4P55283 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDH4P55283 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.23■□□□□ 0.19
CDH4P55283 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH4P55283 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH4P55283 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CDH4P55283 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH4P55283 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH4P55283 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH4P55283 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms