Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
MSH6P52701 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
MSH6P52701 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
MSH6P52701 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH6P52701 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MSH6P52701 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 RAC2-202ENST00000401529 569 ntTSL 4 BASIC21.72■■□□□ 1.07
MSH6P52701 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH6P52701 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH6P52701 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH6P52701 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 MIR3147-201ENST00000577811 66 ntBASIC21.72■■□□□ 1.07
MSH6P52701 AC097359.3-201ENST00000603982 1210 ntBASIC21.72■■□□□ 1.07
MSH6P52701 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH6P52701 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.72■■□□□ 1.07
MSH6P52701 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH6P52701 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 NF2-208ENST00000403435 2568 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH6P52701 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
MSH6P52701 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH6P52701 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH6P52701 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 RNU1-114P-201ENST00000365297 166 ntBASIC21.71■■□□□ 1.07
MSH6P52701 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
MSH6P52701 AL133267.1-201ENST00000398220 340 ntBASIC21.71■■□□□ 1.07
MSH6P52701 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH6P52701 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
MSH6P52701 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH6P52701 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH6P52701 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH6P52701 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
MSH6P52701 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH6P52701 REXO1L1P-202ENST00000608646 1974 ntBASIC21.71■■□□□ 1.07
MSH6P52701 AC080080.1-201ENST00000625121 2420 ntBASIC21.71■■□□□ 1.07
MSH6P52701 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.07
MSH6P52701 AL138799.1-201ENST00000448213 1675 ntBASIC21.7■■□□□ 1.07
MSH6P52701 BCL2-203ENST00000589955 5011 ntBASIC21.7■■□□□ 1.07
MSH6P52701 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC21.7■■□□□ 1.07
MSH6P52701 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH6P52701 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH6P52701 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH6P52701 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH6P52701 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
MSH6P52701 PARVG-202ENST00000415224 999 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH6P52701 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH6P52701 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
MSH6P52701 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
MSH6P52701 AC005730.2-201ENST00000564549 1184 ntBASIC21.7■■□□□ 1.06
MSH6P52701 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH6P52701 AP001282.1-201ENST00000531301 1499 ntBASIC21.7■■□□□ 1.06
MSH6P52701 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 AC012313.1-201ENST00000593393 3059 ntBASIC21.7■■□□□ 1.06
MSH6P52701 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH6P52701 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH6P52701 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
MSH6P52701 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH6P52701 ACTG1P2-201ENST00000415776 1125 ntBASIC21.69■■□□□ 1.06
MSH6P52701 ACTG1P11-201ENST00000425411 1125 ntBASIC21.69■■□□□ 1.06
MSH6P52701 AL596276.2-201ENST00000447525 331 ntBASIC21.69■■□□□ 1.06
MSH6P52701 RN7SL818P-201ENST00000485099 259 ntBASIC21.69■■□□□ 1.06
MSH6P52701 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH6P52701 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms