Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 AP001282.1-201ENST00000531301 1499 ntBASIC16.18■□□□□ 0.18
HADHAP40939 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HADHAP40939 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.18■□□□□ 0.18
HADHAP40939 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HADHAP40939 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.18■□□□□ 0.18
HADHAP40939 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 AC134684.3-201ENST00000641758 218 ntBASIC16.18■□□□□ 0.18
HADHAP40939 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.18■□□□□ 0.18
HADHAP40939 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.18■□□□□ 0.18
HADHAP40939 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.18■□□□□ 0.18
HADHAP40939 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HADHAP40939 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HADHAP40939 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 AP3S2-216ENST00000617003 1561 ntBASIC16.17■□□□□ 0.18
HADHAP40939 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.17■□□□□ 0.18
HADHAP40939 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.17■□□□□ 0.18
HADHAP40939 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.17■□□□□ 0.18
HADHAP40939 RARRES2P9-201ENST00000565168 469 ntBASIC16.17■□□□□ 0.18
HADHAP40939 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.17■□□□□ 0.18
HADHAP40939 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.17■□□□□ 0.18
HADHAP40939 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HADHAP40939 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HADHAP40939 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
HADHAP40939 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.16■□□□□ 0.18
HADHAP40939 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms