Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.39□□□□□ -0.11
SPTA1P02549 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
SPTA1P02549 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 HIST2H2BC-201ENST00000498492 580 ntBASIC14.39□□□□□ -0.11
SPTA1P02549 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.39□□□□□ -0.11
SPTA1P02549 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.39□□□□□ -0.11
SPTA1P02549 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.39□□□□□ -0.11
SPTA1P02549 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.39□□□□□ -0.11
SPTA1P02549 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
SPTA1P02549 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.39□□□□□ -0.11
SPTA1P02549 AC008267.1-201ENST00000474858 1069 ntBASIC14.39□□□□□ -0.11
SPTA1P02549 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.39□□□□□ -0.11
SPTA1P02549 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.39□□□□□ -0.11
SPTA1P02549 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SPTA1P02549 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.39□□□□□ -0.11
SPTA1P02549 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.38□□□□□ -0.11
SPTA1P02549 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SPTA1P02549 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SPTA1P02549 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
SPTA1P02549 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SPTA1P02549 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SPTA1P02549 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.38□□□□□ -0.11
SPTA1P02549 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPTA1P02549 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
SPTA1P02549 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
SPTA1P02549 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SPTA1P02549 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.37□□□□□ -0.11
SPTA1P02549 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.37□□□□□ -0.11
SPTA1P02549 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC14.37□□□□□ -0.11
SPTA1P02549 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.37□□□□□ -0.11
SPTA1P02549 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SPTA1P02549 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SPTA1P02549 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.37□□□□□ -0.11
SPTA1P02549 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
SPTA1P02549 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.37□□□□□ -0.11
SPTA1P02549 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.37□□□□□ -0.11
SPTA1P02549 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms