Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 ACTG1P3-201ENST00000431775 1114 ntBASIC20.69■□□□□ 0.9
COL3A1P02461 AC233724.13-201ENST00000598383 410 ntBASIC20.69■□□□□ 0.9
COL3A1P02461 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.69■□□□□ 0.9
COL3A1P02461 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL3A1P02461 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC20.69■□□□□ 0.9
COL3A1P02461 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL3A1P02461 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC20.69■□□□□ 0.9
COL3A1P02461 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL3A1P02461 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL3A1P02461 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.69■□□□□ 0.9
COL3A1P02461 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
COL3A1P02461 BRF1-202ENST00000379932 884 ntTSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL3A1P02461 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL3A1P02461 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC20.69■□□□□ 0.9
COL3A1P02461 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 CROCCP4-201ENST00000457096 498 ntBASIC20.69■□□□□ 0.9
COL3A1P02461 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.69■□□□□ 0.9
COL3A1P02461 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC20.69■□□□□ 0.9
COL3A1P02461 METTL26-214ENST00000614890 801 ntTSL 3 BASIC20.69■□□□□ 0.9
COL3A1P02461 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.69■□□□□ 0.9
COL3A1P02461 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC20.69■□□□□ 0.9
COL3A1P02461 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.68■□□□□ 0.9
COL3A1P02461 AL139384.1-201ENST00000612143 3047 ntBASIC20.68■□□□□ 0.9
COL3A1P02461 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
COL3A1P02461 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.68■□□□□ 0.9
COL3A1P02461 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.68■□□□□ 0.9
COL3A1P02461 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL3A1P02461 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL3A1P02461 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.68■□□□□ 0.9
COL3A1P02461 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.68■□□□□ 0.9
COL3A1P02461 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.68■□□□□ 0.9
COL3A1P02461 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.68■□□□□ 0.9
COL3A1P02461 AP001889.1-201ENST00000525414 633 ntBASIC20.68■□□□□ 0.9
COL3A1P02461 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.68■□□□□ 0.9
COL3A1P02461 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL3A1P02461 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.68■□□□□ 0.9
COL3A1P02461 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
COL3A1P02461 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC20.68■□□□□ 0.9
COL3A1P02461 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL3A1P02461 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL3A1P02461 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 AC020658.6-201ENST00000623564 1870 ntBASIC20.67■□□□□ 0.9
COL3A1P02461 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL3A1P02461 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.67■□□□□ 0.9
COL3A1P02461 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
COL3A1P02461 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.67■□□□□ 0.9
COL3A1P02461 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms