Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.83■□□□□ 0.12
PDGFBP01127 GGT3P-204ENST00000453783 1664 ntBASIC15.83■□□□□ 0.12
PDGFBP01127 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.83■□□□□ 0.12
PDGFBP01127 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 REXO1L1P-202ENST00000608646 1974 ntBASIC15.82■□□□□ 0.12
PDGFBP01127 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
PDGFBP01127 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PDGFBP01127 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.82■□□□□ 0.12
PDGFBP01127 CRCP-204ENST00000398684 492 ntTSL 2 BASIC15.82■□□□□ 0.12
PDGFBP01127 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 KRT18P66-201ENST00000452970 1269 ntBASIC15.82■□□□□ 0.12
PDGFBP01127 RN7SL818P-201ENST00000485099 259 ntBASIC15.82■□□□□ 0.12
PDGFBP01127 AC024681.1-201ENST00000521917 487 ntBASIC15.82■□□□□ 0.12
PDGFBP01127 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 RN7SL725P-201ENST00000606439 259 ntBASIC15.82■□□□□ 0.12
PDGFBP01127 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.82■□□□□ 0.12
PDGFBP01127 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PDGFBP01127 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
PDGFBP01127 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.82■□□□□ 0.12
PDGFBP01127 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.82■□□□□ 0.12
PDGFBP01127 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.82■□□□□ 0.12
PDGFBP01127 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDGFBP01127 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFBP01127 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.81■□□□□ 0.12
PDGFBP01127 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PDGFBP01127 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFBP01127 AC007274.2-201ENST00000421675 662 ntBASIC15.81■□□□□ 0.12
PDGFBP01127 AL596276.2-201ENST00000447525 331 ntBASIC15.81■□□□□ 0.12
PDGFBP01127 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
PDGFBP01127 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.81■□□□□ 0.12
PDGFBP01127 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PDGFBP01127 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFBP01127 AC022217.1-201ENST00000521069 738 ntBASIC15.81■□□□□ 0.12
PDGFBP01127 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFBP01127 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.81■□□□□ 0.12
PDGFBP01127 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFBP01127 AL645939.5-201ENST00000606834 243 ntBASIC15.81■□□□□ 0.12
PDGFBP01127 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC15.81■□□□□ 0.12
PDGFBP01127 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.81■□□□□ 0.12
PDGFBP01127 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDGFBP01127 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PDGFBP01127 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFBP01127 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PDGFBP01127 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFBP01127 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PDGFBP01127 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFBP01127 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFBP01127 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFBP01127 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFBP01127 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms