Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
CTDNEP1O95476 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.54
CTDNEP1O95476 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.39■□□□□ 0.54
CTDNEP1O95476 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CTDNEP1O95476 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
CTDNEP1O95476 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 AL589739.1-201ENST00000607720 493 ntBASIC18.39■□□□□ 0.53
CTDNEP1O95476 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 SPDYE12P-201ENST00000618416 771 ntBASIC18.39■□□□□ 0.53
CTDNEP1O95476 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 PKD1P1-201ENST00000458669 6805 ntBASIC18.39■□□□□ 0.53
CTDNEP1O95476 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.39■□□□□ 0.53
CTDNEP1O95476 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDNEP1O95476 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 TNRC18P2-201ENST00000417666 2714 ntBASIC18.38■□□□□ 0.53
CTDNEP1O95476 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDNEP1O95476 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDNEP1O95476 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.37■□□□□ 0.53
CTDNEP1O95476 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 KRT18P64-201ENST00000434946 1219 ntBASIC18.37■□□□□ 0.53
CTDNEP1O95476 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms