Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
SEMA3DO95025 AC004461.1-201ENST00000412461 403 ntBASIC15.34■□□□□ 0.05
SEMA3DO95025 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 KRT18P32-201ENST00000424695 1287 ntBASIC15.34■□□□□ 0.05
SEMA3DO95025 AL139010.1-201ENST00000454878 894 ntBASIC15.34■□□□□ 0.05
SEMA3DO95025 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 AC099063.4-201ENST00000641099 1602 ntBASIC15.34■□□□□ 0.05
SEMA3DO95025 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SEMA3DO95025 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.33■□□□□ 0.05
SEMA3DO95025 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SEMA3DO95025 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
SEMA3DO95025 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.33■□□□□ 0.05
SEMA3DO95025 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.33■□□□□ 0.05
SEMA3DO95025 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SEMA3DO95025 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.33■□□□□ 0.04
SEMA3DO95025 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.33■□□□□ 0.04
SEMA3DO95025 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 AC112482.1-201ENST00000492080 688 ntBASIC15.33■□□□□ 0.04
SEMA3DO95025 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.33■□□□□ 0.04
SEMA3DO95025 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.33■□□□□ 0.04
SEMA3DO95025 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.33■□□□□ 0.04
SEMA3DO95025 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.33■□□□□ 0.04
SEMA3DO95025 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.33■□□□□ 0.04
SEMA3DO95025 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SEMA3DO95025 AC004835.2-201ENST00000603762 682 ntBASIC15.33■□□□□ 0.04
SEMA3DO95025 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.33■□□□□ 0.04
SEMA3DO95025 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.33■□□□□ 0.04
SEMA3DO95025 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.33■□□□□ 0.04
SEMA3DO95025 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
SEMA3DO95025 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SEMA3DO95025 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 AC144831.1-201ENST00000573312 2656 ntBASIC15.32■□□□□ 0.04
SEMA3DO95025 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.32■□□□□ 0.04
SEMA3DO95025 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.32■□□□□ 0.04
SEMA3DO95025 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.32■□□□□ 0.04
SEMA3DO95025 EEF1DP4-201ENST00000446006 880 ntBASIC15.32■□□□□ 0.04
SEMA3DO95025 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
SEMA3DO95025 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms