Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 KLF2P2-201ENST00000416807 1039 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 AC090164.2-201ENST00000611487 516 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 NAP1L6-202ENST00000641404 1222 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 AL157791.1-201ENST00000553667 1699 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 MADD-208ENST00000405573 1823 ntTSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AL136309.1-201ENST00000403917 691 ntBASIC12.1□□□□□ -0.47
COL6A5A8TX70 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AC018463.1-201ENST00000456674 917 ntBASIC12.1□□□□□ -0.47
COL6A5A8TX70 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 ABALON-201ENST00000629058 1903 ntBASIC12.1□□□□□ -0.47
COL6A5A8TX70 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 TMCO5B-205ENST00000530020 894 ntBASIC12.1□□□□□ -0.47
COL6A5A8TX70 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 HPN-206ENST00000597419 1212 ntTSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AL132994.2-201ENST00000603120 687 ntBASIC12.1□□□□□ -0.47
COL6A5A8TX70 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CAP2P1-201ENST00000557743 1390 ntBASIC12.1□□□□□ -0.47
COL6A5A8TX70 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL6A5A8TX70 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC12.1□□□□□ -0.47
COL6A5A8TX70 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC053503.3-201ENST00000448375 114 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC073150.1-201ENST00000450406 1084 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 RNMTL1P1-201ENST00000454103 560 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC243562.2-201ENST00000561247 970 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC005618.3-201ENST00000624928 458 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AP000356.3-201ENST00000382243 753 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC084752.1-201ENST00000509766 622 ntBASIC12.09□□□□□ -0.47
COL6A5A8TX70 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC12.09□□□□□ -0.47
COL6A5A8TX70 AC011247.3-201ENST00000603297 438 ntBASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms