Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 BNIP3P1-202ENST00000550043 1585 ntBASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CUEDC1Q9NWM3 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 HLA-V-201ENST00000429037 534 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC055876.3-201ENST00000431496 288 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 TSPY16P-201ENST00000449843 468 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC125807.1-201ENST00000483097 614 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC243562.2-201ENST00000561247 970 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC051619.7-201ENST00000568314 623 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC027307.3-201ENST00000594262 1100 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AC138649.4-201ENST00000612222 287 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 AL365203.3-201ENST00000609742 2057 ntBASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CUEDC1Q9NWM3 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 KLF2P3-201ENST00000451977 1087 ntBASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 CR383656.12-201ENST00000549567 513 ntBASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 DUX4L27-201ENST00000554796 1261 ntBASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.47■□□□□ 0.07
CUEDC1Q9NWM3 MIR6752-201ENST00000618442 71 ntBASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms