Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MIR4649-201ENST00000582839 64 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 AC073413.1-201ENST00000603927 732 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 MME-218ENST00000625667 363 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AC006335.1-201ENST00000445200 547 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 AC019193.1-201ENST00000506678 823 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AL138688.1-201ENST00000624851 1594 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.66□□□□□ -0.22
COL12A1Q99715 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
COL12A1Q99715 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.66□□□□□ -0.22
COL12A1Q99715 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC13.66□□□□□ -0.22
COL12A1Q99715 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.66□□□□□ -0.22
COL12A1Q99715 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC13.66□□□□□ -0.22
COL12A1Q99715 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.66□□□□□ -0.22
COL12A1Q99715 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL12A1Q99715 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.66□□□□□ -0.22
COL12A1Q99715 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.66□□□□□ -0.22
COL12A1Q99715 SAMD11P1-201ENST00000571429 661 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 RN7SL713P-201ENST00000582127 302 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 PPY2P-201ENST00000582808 702 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.66□□□□□ -0.22
COL12A1Q99715 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL12A1Q99715 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.66□□□□□ -0.22
COL12A1Q99715 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC13.66□□□□□ -0.22
COL12A1Q99715 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC13.66□□□□□ -0.22
COL12A1Q99715 RPS9P1-201ENST00000419943 583 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 KRT18P43-201ENST00000469825 1281 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.66□□□□□ -0.22
COL12A1Q99715 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.66□□□□□ -0.22
COL12A1Q99715 AC103691.2-201ENST00000618824 433 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 PCGF3-213ENST00000620529 1899 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 LETM1P2-201ENST00000597330 2178 ntBASIC13.66□□□□□ -0.22
COL12A1Q99715 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL12A1Q99715 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL12A1Q99715 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.65□□□□□ -0.22
COL12A1Q99715 POU5F1P6-201ENST00000466990 990 ntBASIC13.65□□□□□ -0.22
COL12A1Q99715 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 AC005622.1-201ENST00000636801 1703 ntBASIC13.65□□□□□ -0.22
COL12A1Q99715 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL12A1Q99715 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms