Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC25.7■■□□□ 1.71
IFT140Q96RY7 AC025271.4-201ENST00000621477 1726 ntBASIC25.7■■□□□ 1.71
IFT140Q96RY7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
IFT140Q96RY7 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 RPL18P13-201ENST00000478088 569 ntBASIC25.7■■□□□ 1.7
IFT140Q96RY7 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 IRF3-215ENST00000596822 823 ntTSL 3 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 AC242376.2-201ENST00000619355 883 ntBASIC25.7■■□□□ 1.7
IFT140Q96RY7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 AMT-224ENST00000635808 1610 ntTSL 5 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 LRRFIP1P1-201ENST00000498774 2246 ntBASIC25.7■■□□□ 1.7
IFT140Q96RY7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
IFT140Q96RY7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC25.7■■□□□ 1.7
IFT140Q96RY7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 PUDPP3-201ENST00000445368 636 ntBASIC25.69■■□□□ 1.7
IFT140Q96RY7 PPOX-204ENST00000462866 473 ntTSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 RCC2P8-201ENST00000502779 1035 ntBASIC25.69■■□□□ 1.7
IFT140Q96RY7 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 AC090857.1-201ENST00000527400 390 ntBASIC25.69■■□□□ 1.7
IFT140Q96RY7 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 MIR6842-201ENST00000612539 65 ntBASIC25.69■■□□□ 1.7
IFT140Q96RY7 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
IFT140Q96RY7 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
IFT140Q96RY7 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 RN7SKP214-201ENST00000364208 315 ntBASIC25.68■■□□□ 1.7
IFT140Q96RY7 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 AL136295.7-201ENST00000619226 1200 ntBASIC25.68■■□□□ 1.7
IFT140Q96RY7 AC138466.3-201ENST00000619983 221 ntBASIC25.68■■□□□ 1.7
IFT140Q96RY7 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 TBC1D3J-201ENST00000620719 1426 ntBASIC25.68■■□□□ 1.7
IFT140Q96RY7 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC25.68■■□□□ 1.7
IFT140Q96RY7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
IFT140Q96RY7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 AC009779.1-201ENST00000551138 283 ntBASIC25.67■■□□□ 1.7
IFT140Q96RY7 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 MIR4649-201ENST00000582839 64 ntBASIC25.67■■□□□ 1.7
IFT140Q96RY7 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC25.67■■□□□ 1.7
IFT140Q96RY7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
IFT140Q96RY7 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 EHF-205ENST00000527935 557 ntTSL 2 BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms