Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AL137013.1-201ENST00000432946 1228 ntBASIC15.1■□□□□ 0.01
NR1H4Q96RI1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC139887.4-201ENST00000607877 719 ntBASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC011558.1-201ENST00000623459 338 ntBASIC15.1■□□□□ 0.01
NR1H4Q96RI1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 FAM8A6P-201ENST00000407496 1135 ntBASIC15.09■□□□□ 0.01
NR1H4Q96RI1 ACTG1P4-201ENST00000425123 1122 ntBASIC15.09■□□□□ 0.01
NR1H4Q96RI1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 AC005363.2-201ENST00000618631 242 ntBASIC15.09■□□□□ 0.01
NR1H4Q96RI1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.09■□□□□ 0.01
NR1H4Q96RI1 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.09■□□□□ 0.01
NR1H4Q96RI1 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
NR1H4Q96RI1 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms