Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 ACTG1P3-201ENST00000431775 1114 ntBASIC15.96■□□□□ 0.15
HMGB4Q8WW32 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 BRI3BPP1-201ENST00000594224 787 ntBASIC15.96■□□□□ 0.15
HMGB4Q8WW32 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB4Q8WW32 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.96■□□□□ 0.14
HMGB4Q8WW32 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 AC134915.1-201ENST00000426461 574 ntBASIC15.95■□□□□ 0.14
HMGB4Q8WW32 KRT18P64-201ENST00000434946 1219 ntBASIC15.95■□□□□ 0.14
HMGB4Q8WW32 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 RN7SL219P-201ENST00000582872 296 ntBASIC15.95■□□□□ 0.14
HMGB4Q8WW32 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.95■□□□□ 0.14
HMGB4Q8WW32 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB4Q8WW32 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 INTS4P2-202ENST00000614726 2019 ntBASIC15.94■□□□□ 0.14
HMGB4Q8WW32 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 SOCS2P1-201ENST00000417727 557 ntBASIC15.94■□□□□ 0.14
HMGB4Q8WW32 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB4Q8WW32 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms