Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 AC006449.6-201ENST00000612330 2296 ntBASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 AL162726.2-201ENST00000438986 1017 ntBASIC15.48■□□□□ 0.07
LMX1AQ8TE12 RPS2P32-201ENST00000439199 892 ntBASIC15.48■□□□□ 0.07
LMX1AQ8TE12 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.48■□□□□ 0.07
LMX1AQ8TE12 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 FER1L4-210ENST00000615531 5998 ntBASIC15.47■□□□□ 0.07
LMX1AQ8TE12 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 HLA-V-201ENST00000429037 534 ntBASIC15.47■□□□□ 0.07
LMX1AQ8TE12 CROCCP4-201ENST00000457096 498 ntBASIC15.47■□□□□ 0.07
LMX1AQ8TE12 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 AL359711.2-201ENST00000563105 872 ntBASIC15.47■□□□□ 0.07
LMX1AQ8TE12 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.47■□□□□ 0.07
LMX1AQ8TE12 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.47■□□□□ 0.07
LMX1AQ8TE12 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms